HL_97724.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-6
1	HL_1J1U_002	1J1U	0.5994	0	tRNA anticodon loop	B	tRNA(Tyr)	A	532	C	533	U	534	G	535	U	536	A	537	G	538	A	539	U	540	cWW	ncWW
2	HL_7KGA_001	7KGA	0.5944	1		A	Flavivirus DB element	U	22	C	23	A	24	G	26	C	27	C	28	U	29	A	30	G	31	cWW	ncWW
3	HL_4P5J_002	4P5J	0.5884	0	Turnip yellow mosaic virus TLS RNA anticodon loop	A	tRNA-like 3' UTR element	C	25	U	26	C	27	G	28	A	29	C	30	A	31	C	32	G	33	cWW
4	HL_2IY5_002	2IY5	0.5173	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW	ncWB
5	HL_2ZNI_002	2ZNI	0.3162	0		C	bacterial tRNA	A	31	C	32	U	33	C	34	U	35	A	36	A	37	A	38	U	39	cWW	cWW
6	HL_3WFS_002	3WFS	0.3784	0	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
7	HL_1U0B_002	1U0B	0.3337	0	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
8	HL_4YCO_002	4YCO	0.2831	0	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
9	HL_3TUP_002	3TUP	0.3468	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
10	HL_2AZX_005	2AZX	0.1719	0	tRNA anticodon loop	D	72-MER	A	531	C	532	U	533	C	534	C	535	A	536	G	537	A	538	U	539	cWW
11	HL_4TUE_034	4TUE	0.0000	0	tRNA anticodon loop	QV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
12	HL_4V9Q_214	4V9Q	0.1161	0	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
13	HL_4WT8_216	4WT8	0.1757	0	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
14	HL_4V50_137	4V50	0.1510	0	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
15	HL_7U2I_104	7U2I	0.1990	0		1w	tRNA	C	31	U	32	U	33	C	34	C	35	C	36	A	37	A	38	G	39	cWW
16	HL_5IBB_210	5IBB	0.2238	0	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
17	HL_4V9I_039	4V9I	0.2511	0	tRNA anticodon loop	AY	tRNA	U	31	C	32	U	33	C	34	G	35	A	36	A	37	A	38	A	39	cWW
18	HL_6ORD_036	6ORD	0.2321	0	tRNA anticodon loop	QY	tRNA	C	31	U	32	U	33	G	34	G	35	C	36	A	37	A	38	G	39	cWW
19	HL_6UFG_007	6UFG	0.2216	0	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
20	HL_4P95_002	4P95	0.2492	0	Lariat-capping (LC) ribozyme DP2.1 hairpin	A	RNA (192-MER)	G	241	C	242	U	243	A	244	A	245	U	246	C	247	A	248	C	249	cWW
21	HL_4V9K_034	4V9K	0.2752	0	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
22	HL_6UFM_002	6UFM	0.3764	0	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
23	HL_4V90_033	4V90	0.3876	0	tRNA anticodon loop	AV	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
24	HL_3W3S_002	3W3S	0.4085	0	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	U	34	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
25	HL_1N78_002	1N78	0.3678	0	tRNA anticodon loop	C	tRNA(Glu)	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
26	HL_2AKE_002	2AKE	0.4339	0	tRNA anticodon loop	B	tRNA	A	31	C	32	U	33	C	34	C	35	A	36	G	37	A	38	U	39	cWW
27	HL_5T83_002	5T83	0.3928	0	Guanidine riboswitch aptamer P2 hairpin	A	Guanidine-I riboswitch	U	56	U	57	U	58	C	59	A	60	C	61	A	62	A	63	A	64	cWW		ntSHa
28	HL_1J2B_001	1J2B	0.5392	0		C	tRNA(Val)	C	932	C	933	U	934	U	935	A	936	C	937	G	938	A	939	G	940	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCUCAUAAC	4
ACUGAAAAU	3
AUUGAAAAU	2
ACUCCAGAU	2
GCUGAUAAC	2
ACUGUAGAU	1
UCAAGCCUAG	1
CUCGACACG	1
ACUCUAAAU	1
AUUGCAAAU	1
CUUCCCAAG	1
CCUUACAAG	1
UCUCGAAAA	1
CUUGGCAAG	1
GCUAAUCAC	1
ACUCAUAAU	1
ACUUCAAAU	1
CCUCUCAAG	1
UUUCACAAA	1
CCUUACGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	5
CUGAAAA	3
UUGAAAA	2
CUCCAGA	2
CUGAUAA	2
CUGUAGA	1
CAAGCCUA	1
UCGACAC	1
CUCUAAA	1
UUGCAAA	1
UUCCCAA	1
CUUACAA	1
CUCGAAA	1
UUGGCAA	1
CUAAUCA	1
CUUCAAA	1
CUCUCAA	1
UUCACAA	1
CUUACGA	1

Release history

Release	3.62	3.63	3.64	3.65	3.66
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_97724.1 Version HL_97724.1 of this group appears in releases 3.62 to 3.66 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_97724.1 Version HL_97724.1 of this group appears in releases 3.62 to 3.66

Download

Csv

Json