HL_4P9R_003

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGACGAUC

Length

8 nucleotides

Bulged bases (A, C, G, U)

297A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_95969.2

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

2

Unit IDs

4P9R|1|A|G|295
4P9R|1|A|G|296
4P9R|1|A|A|297
4P9R|1|A|C|298
4P9R|1|A|G|299
4P9R|1|A|A|300
4P9R|1|A|U|301
4P9R|1|A|C|302

Current chains

Chain A

RNA (189-MER)

Nearby chains