3D structure

PDB id
4QLM (explore in PDB, NAKB, or RNA 3D Hub)
Description
ydao riboswitch binding to c-di-AMP
Experimental method
X-RAY DIFFRACTION
Resolution
2.72 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
GNRA
Broad Annotation
GNRA
Motif group
HL_37824.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
359

Unit IDs

4QLM|1|A|C|54
4QLM|1|A|G|55
4QLM|1|A|A|56
4QLM|1|A|A|57
4QLM|1|A|A|58
4QLM|1|A|G|59

Current chains

Chain A
RNA (108-MER)

Nearby chains

No other chains within 10Å

Coloring options:

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