HL_4R0D_016

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UGCCCUUCAAUUGGAGGUGCCA

Length

22 nucleotides

Bulged bases

4R0D|1|A|C|128, 4R0D|1|A|A|134, 4R0D|1|A|U|135, 4R0D|1|A|U|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4R0D|1|A|U|125
4R0D|1|A|G|126
4R0D|1|A|C|127
4R0D|1|A|C|128
4R0D|1|A|C|129
4R0D|1|A|U|130
4R0D|1|A|U|131
4R0D|1|A|C|132
4R0D|1|A|A|133
4R0D|1|A|A|134
4R0D|1|A|U|135
4R0D|1|A|U|136
4R0D|1|A|G|137
4R0D|1|A|G|138
4R0D|1|A|A|139
4R0D|1|A|G|140
4R0D|1|A|G|141
4R0D|1|A|U|142
4R0D|1|A|G|143
4R0D|1|A|C|144
4R0D|1|A|C|145
4R0D|1|A|A|146

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains

Chain B

LIGATED EXONS