4R0D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4R0D_001 | 1/A/31:39 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_33597.1 | |
| HL_4R0D_002 | 1/A/48:58 | No text annotation | ||
| HL_4R0D_003 | 1/A/87:92 | GNRA | geometric HL_4WFL_003 HL_34789.1 | |
| HL_4R0D_016 | 1/A/125:146 | No text annotation | ||
| HL_4R0D_004 | 1/A/130:139 | No text annotation | ||
| HL_4R0D_005 | 1/A/173:178 | GNRA | geometric HL_3RW6_001 HL_34789.1 | |
| HL_4R0D_017 | 1/A/214:232 | No text annotation | ||
| HL_4R0D_006 | 1/A/217:229 | No text annotation | ||
| HL_4R0D_007 | 1/A/253:263 | No text annotation | ||
| HL_4R0D_008 | 1/A/369:374 | GNRA | geometric HL_3RW6_001 HL_34789.1 | |
| HL_4R0D_009 | 1/A/390:395 | No text annotation | geometric HL_8OI5_043 HL_34789.1 | |
| HL_4R0D_010 | 1/A/447:453 | No text annotation | ||
| HL_4R0D_011 | 1/A/466:473 | No text annotation | ||
| HL_4R0D_012 | 1/A/481:486 | No text annotation | geometric HL_8B0X_006 HL_34789.1 | |
| HL_4R0D_013 | 1/A/524:529 | No text annotation | ||
| HL_4R0D_014 | 1/A/563:568 | GNRA | homologous HL_1KXK_001 NA | |
| HL_4R0D_015 | 1/A/600:605 | GNRA | geometric HL_3SUX_002 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4R0D_018 | GNRA with extra cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4R0D_001 | 1/A/10:14, 1/A/339:342 | No text annotation | ||
| IL_4R0D_022 | 1/A/75:76, 1/A/103:108 | No text annotation | ||
| IL_4R0D_023 | 1/A/80:82, 1/A/97:99 | Isolated cWH basepair | geometric IL_3SJ2_001 IL_10892.1 | |
| IL_4R0D_005 | 1/A/121:123, 1/A/148:149 | No text annotation | ||
| IL_4R0D_028 | 1/A/121:124, 1/A/147:149 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_71625.1 | |
| IL_4R0D_007 | 1/A/125:130, 1/A/139:146 | No text annotation | ||
| IL_4R0D_008 | 1/A/161:162, 1/A/312:314 | No text annotation | geometric IL_9AXU_125 IL_14190.1 | |
| IL_4R0D_009 | 1/A/163:167, 1/A/306:311 | No text annotation | ||
| IL_4R0D_025 | 1/A/244:246, 1/A/270:282 | No text annotation | ||
| IL_4R0D_014 | 1/A/354:356, 1/A/410:412 | Isolated non-canonical cWW pair | geometric IL_8PFQ_003 IL_01003.1 | |
| IL_4R0D_015 | 1/A/429:434, 1/A/491:497 | No text annotation | ||
| IL_4R0D_017 | 1/A/518:521, 1/A/532:536 | Receptor of 11-nt loop-receptor motif | ||
| IL_4R0D_019 | 1/A/558:559, 1/A/572:575 | Multiple bulged bases | homologous IL_1KXK_003 NA | |
| IL_4R0D_026 | 1/A/590:591, 1/A/614:616 | No text annotation | ||
| IL_4R0D_021 | 1/A/593:597, 1/A/608:612 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4R0D_002 | No text annotation | ||
| IL_4R0D_003 | Isolated non-canonical cWW pair | ||
| IL_4R0D_004 | Tandem non-canonical cWW pairs | ||
| IL_4R0D_024 | Tandem non-canonical cWW pairs | ||
| IL_4R0D_006 | No text annotation | ||
| IL_4R0D_010 | No text annotation | ||
| IL_4R0D_011 | Isolated non-canonical cWW pair | ||
| IL_4R0D_012 | No text annotation | ||
| IL_4R0D_013 | No text annotation | ||
| IL_4R0D_016 | No text annotation | ||
| IL_4R0D_018 | Isolated non-canonical cWW pair | ||
| IL_4R0D_020 | Isolated non-canonical cWW pair | ||
| IL_4R0D_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4R0D_004 | 1/A/68:70, 1/A/113:120, 1/A/150:152 | No text annotation | ||
| J3_4R0D_003 | 1/A/170:172, 1/A/179:183, 1/A/302:303 | No text annotation | geometric J3_3IGI_001 J3_14360.1 | |
| J3_4R0D_005 | 1/A/360:363, 1/A/380:383, 1/A/402:406 | No text annotation | ||
| J4_4R0D_001 | 1/A/435:441, 1/A/459:463, 1/A/476:478, 1/A/489:490 | No text annotation | ||
| J5_4R0D_002 | 1/A/26:28, 1/A/42:43, 1/A/63:64, 1/A/156:159, 1/A/316:327 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4R0D_001 | No text annotation | ||
| J3_4R0D_002 | No text annotation | ||
| J5_4R0D_001 | No text annotation |
Coloring options: