HL_4R4V_001

3D structure

PDB id

4R4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the VS ribozyme - G638A mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

CGUCGUCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Varkud satellite (VS) ribozyme helix 1

Broad Annotation

Varkud satellite (VS) ribozyme

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4R4V|1|A|C|626
4R4V|1|A|G|627
4R4V|1|A|U|628
4R4V|1|A|C|629
4R4V|1|A|G|630
4R4V|1|A|U|631
4R4V|1|A|C|632
4R4V|1|A|G|633
4R4V|1|A|G|634

Current chains

Chain A

VS ribozyme RNA

Nearby chains