4R4V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4R4V_001 | 1/A/626:634 | Anticodon loop related HL_06059.3 | ||
| HL_4R4V_002 | 1/A/670:676 | No text annotation HL_15574.1 | ||
| HL_4R4V_003 | 1/A/689:697 | T-loop related HL_28252.4 | ||
| HL_4R4V_004 | 1/A/735:740 | GNRA HL_37824.5 | ||
| HL_4R4V_005 | 1/A/626:634 | Anticodon loop related | ||
| HL_4R4V_006 | 1/A/670:676 | No text annotation | geometric HL_4R4V_002 HL_15574.1 | |
| HL_4R4V_007 | 1/A/689:697 | T-loop related | geometric HL_4R4V_003 HL_28252.4 | |
| HL_4R4V_008 | 1/A/735:740 | GNRA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4R4V_001 | 1/A/607:608, 1/A/777:779 | Minor groove platform IL_92540.1 | ||
| IL_4R4V_004 | 1/A/660:661, 1/A/712:714 | Single bulged A IL_31462.3 | ||
| IL_4R4V_002 | 1/A/619:623, 1/A/637:640 | No text annotation IL_84251.1 | ||
| IL_4R4V_005 | 1/A/719:722, 1/A/755:756 | Intercalated cWS IL_81831.1 | ||
| IL_4R4V_006 | 1/A/724:726, 1/A/749:753 | Isolated non-canonical cWW pair IL_10389.1 | ||
| IL_4R4V_007 | 1/A/607:608, 1/A/777:779 | Minor groove platform | ||
| IL_4R4V_008 | 1/A/619:623, 1/A/637:640 | No text annotation | geometric IL_4R4V_002 IL_84251.1 | |
| IL_4R4V_003 | 1/A/651:653, 1/A/766:767 | Single bulged A IL_31462.3 | ||
| IL_4R4V_009 | 1/A/651:653, 1/A/766:767 | Single bulged A | ||
| IL_4R4V_010 | 1/A/660:661, 1/A/712:714 | Single bulged A | ||
| IL_4R4V_011 | 1/A/719:722, 1/A/755:756 | Intercalated cWS | ||
| IL_4R4V_012 | 1/A/724:726, 1/A/749:753 | Isolated non-canonical cWW pair | geometric IL_4R4V_006 IL_10389.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4R4V_003 | 1/A/663:666, 1/A/680:683, 1/A/703:710 | No text annotation J3_98484.1 | ||
| J3_4R4V_001 | 1/A/610:616, 1/A/643:646, 1/A/772:775 | No text annotation J3_89044.1 | ||
| J3_4R4V_002 | 1/A/655:658, 1/A/716:717, 1/A/758:764 | No text annotation J3_51910.1 | ||
| J3_4R4V_004 | 1/A/610:616, 1/A/643:646, 1/A/772:775 | No text annotation | geometric J3_4R4V_001 J3_89044.1 | |
| J3_4R4V_005 | 1/A/655:658, 1/A/716:717, 1/A/758:764 | No text annotation | geometric J3_4R4V_002 J3_51910.1 | |
| J3_4R4V_006 | 1/A/663:666, 1/A/680:683, 1/A/703:710 | No text annotation | geometric J3_4R4V_003 J3_98484.1 |
Problematic loops
No problematic loops
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