HL_4RGF_001

3D structure

PDB id

4RGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUCCUAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4RGF_001 not in the Motif Atlas

Geometric match to HL_4OJI_002

Geometric discrepancy: 0.1565

The information below is about HL_4OJI_002

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_98864.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4RGF|1|A|G|29
4RGF|1|A|U|30
4RGF|1|A|C|31
4RGF|1|A|C|32
4RGF|1|A|U|33
4RGF|1|A|A|34
4RGF|1|A|A|35
4RGF|1|A|G|36
4RGF|1|A|C|37
4RGF|1|A|C|38

Current chains

Chain A

env22 twister ribozyme

Nearby chains