HL_4RQF_003

3D structure

PDB id

4RQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human Seryl-tRNA synthetase dimer complexed with one molecule of tRNAsec

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4RQF_003 not in the Motif Atlas

Homologous match to HL_3RG5_007

Geometric discrepancy: 0.2391

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

4RQF|1|C|C|47|||C
4RQF|1|C|U|47|||D
4RQF|1|C|A|47|||E
4RQF|1|C|G|47|||F
4RQF|1|C|C|47|||G
4RQF|1|C|G|47|||H

Current chains

Chain C

selenocysteine tRNA

Nearby chains

Chain A

Serine--tRNA ligase, cytoplasmic