HL_4TUB_045

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

4TUB|1|RA|U|271, 4TUB|1|RA|U|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_045 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3993

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4TUB|1|RA|G|269
4TUB|1|RA|C|270
4TUB|1|RA|U|271
4TUB|1|RA|U|272
4TUB|1|RA|G|273
4TUB|1|RA|U|274
4TUB|1|RA|C|275

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9