4TUB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4TUB_001 | 1/QA/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_4TUB_003 | 1/QA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4TUB_219 | 1/QA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4TUB_005 | 1/QA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4TUB_006 | 1/QA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4TUB_007 | 1/QA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4TUB_008 | 1/QA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4TUB_009 | 1/QA/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_4TUB_010 | 1/QA/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.8 | |
| HL_4TUB_011 | 1/QA/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4TUB_012 | 1/QA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4TUB_013 | 1/QA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4TUB_014 | 1/QA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4TUB_015 | 1/QA/689:698 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4TUB_016 | 1/QA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4TUB_017 | 1/QA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4TUB_018 | 1/QA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4TUB_019 | 1/QA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4TUB_020 | 1/QA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4TUB_021 | 1/QA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4TUB_022 | 1/QA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4TUB_023 | 1/QA/1028B:1032A | No text annotation | homologous HL_6CZR_235 NA | |
| HL_4TUB_024 | 1/QA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_4TUB_025 | 1/QA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4TUB_026 | 1/QA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4TUB_027 | 1/QA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4TUB_028 | 1/QA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4TUB_029 | 1/QA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4TUB_030 | 1/QA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4TUB_031 | 1/QA/1449:1454 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4TUB_032 | 1/QA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4TUB_033 | 1/QV/12:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4TUB_034 | 1/QV/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 HL_06059.7 | |
| HL_4TUB_035 | 1/QV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4TUE_035 HL_28252.9 | |
| HL_4TUB_036 | 1/QY/31:39 | tRNA anticodon loop | geometric HL_6ORD_036 NA | |
| HL_4TUB_037 | 1/RA/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4TUB_038 | 1/RA/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4TUB_039 | 1/RA/121:126 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_4TUB_040 | 1/RA/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4TUB_042 | 1/RA/183:190 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_4TUB_043 | 1/RA/214:219 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4TUB_044 | 1/RA/235:241 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4TUB_045 | 1/RA/269:275 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_4TUB_046 | 1/RA/329:336 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4TUB_047 | 1/RA/343:347 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_4TUB_048 | 1/RA/351:359 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4TUB_049 | 1/RA/410:418 | No text annotation | ||
| HL_4TUB_050 | 1/RA/437:444 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4TUB_051 | 1/RA/488:493 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4TUB_052 | 1/RA/513:518 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4TUB_053 | 1/RA/568:573 | GNRA | geometric HL_4V88_218 NA | |
| HL_4TUB_054 | 1/RA/589:598 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4TUB_055 | 1/RA/635:641 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_4TUB_056 | 1/RA/654:659 | GNRA | homologous HL_5J7L_152 HL_37824.8 | |
| HL_4TUB_057 | 1/RA/666:672 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4TUB_059 | 1/RA/759:766 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4TUB_060 | 1/RA/791:800 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4TUB_061 | 1/RA/826:832 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4TUB_062 | 1/RA/873:878 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4TUB_063 | 1/RA/930:939 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_4TUB_064 | 1/RA/1000:1007 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4TUB_065 | 1/RA/1024:1031 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4TUB_226 | 1/RA/1111:1119 | No text annotation | ||
| HL_4TUB_067 | 1/RA/1137:1146 | No text annotation | homologous HL_5J7L_212 HL_75293.5 | |
| HL_4TUB_068 | 1/RA/1217:1223 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4TUB_069 | 1/RA/1268:1273 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4TUB_070 | 1/RA/1327:1335 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4TUB_071 | 1/RA/1370:1376 | No text annotation | geometric HL_7RQB_034 NA | |
| HL_4TUB_072 | 1/RA/1409:1414 | GNRA | homologous HL_5J7L_167 HL_37824.8 | |
| HL_4TUB_073 | 1/RA/1435:1444 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4TUB_074 | 1/RA/1499:1506 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4TUB_075 | 1/RA/1538:1544 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4TUB_076 | 1/RA/1579:1584 | No text annotation | ||
| HL_4TUB_077 | 1/RA/1612:1615 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4TUB_078 | 1/RA/1658:1665 | No text annotation | homologous HL_4WF9_038 HL_89567.2 | |
| HL_4TUB_079 | 1/RA/1677:1682 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4TUB_080 | 1/RA/1738:1743 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4TUB_081 | 1/RA/1765:1771 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4TUB_082 | 1/RA/1783:1787 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4TUB_083 | 1/RA/1808:1818 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4TUB_084 | 1/RA/1837:1842 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4TUB_085 | 1/RA/1895:1900 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4TUB_086 | 1/RA/1932:1942 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4TUB_087 | 1/RA/1971:1979 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4TUB_088 | 1/RA/2049:2058 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4TUB_090 | 1/RA/2226:2231 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_4TUB_091 | 1/RA/2260:2268 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4TUB_092 | 1/RA/2276:2288 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4TUB_227 | 1/RA/2316:2324 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_4TUB_094 | 1/RA/2336:2343 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4TUB_095 | 1/RA/2367:2374 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4TUB_096 | 1/RA/2386:2391 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4TUB_097 | 1/RA/2416:2425 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4TUB_098 | 1/RA/2483:2491 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_4TUB_099 | 1/RA/2540:2547 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4TUB_100 | 1/RA/2563:2569 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4TUB_101 | 1/RA/2606:2611 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4TUB_102 | 1/RA/2670:2675 | GNRA | geometric HL_5TBW_017 NA | |
| HL_4TUB_103 | 1/RA/2713:2718 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4TUB_104 | 1/RA/2758:2772 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4TUB_106 | 1/RA/2829:2837 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4TUB_107 | 1/RA/2866:2871 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4TUB_220 | 1/RB/34:48 | No text annotation | homologous HL_4V9F_074 HL_97756.2 | |
| HL_4TUB_108 | 1/RB/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4TUB_109 | 1/RB/86:90 | GNRA | homologous HL_7RQB_071 NA | |
| HL_4TUB_110 | 1/XA/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4TUB_112 | 1/XA/158:163 | GNRA | homologous HL_4LFB_003 HL_37824.8 | |
| HL_4TUB_221 | 1/XA/186:191 | No text annotation | homologous HL_4LFB_004 HL_48417.6 | |
| HL_4TUB_114 | 1/XA/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4TUB_115 | 1/XA/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4TUB_116 | 1/XA/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.8 | |
| HL_4TUB_117 | 1/XA/320:333 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4TUB_118 | 1/XA/342:347 | UNCG | geometric HL_6KYV_004 HL_34617.5 | |
| HL_4TUB_119 | 1/XA/379:384 | GNRA | homologous HL_4LFB_010 HL_37824.8 | |
| HL_4TUB_120 | 1/XA/419:424 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_4TUB_121 | 1/XA/458:474 | GNRA | homologous HL_4LFB_012 HL_37824.8 | |
| HL_4TUB_122 | 1/XA/522:527 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4TUB_123 | 1/XA/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4TUB_124 | 1/XA/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_4TUB_125 | 1/XA/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.8 | |
| HL_4TUB_126 | 1/XA/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4TUB_127 | 1/XA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4TUB_128 | 1/XA/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.8 | |
| HL_4TUB_129 | 1/XA/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.8 | |
| HL_4TUB_130 | 1/XA/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4TUB_131 | 1/XA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.8 | |
| HL_4TUB_133 | 1/XA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_37824.8 | |
| HL_4TUB_134 | 1/XA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4TUB_135 | 1/XA/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_4TUB_136 | 1/XA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.8 | |
| HL_4TUB_137 | 1/XA/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.8 | |
| HL_4TUB_138 | 1/XA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4TUB_139 | 1/XA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4TUB_140 | 1/XA/1449:1454 | No text annotation | geometric HL_6U8D_003 HL_32346.4 | |
| HL_4TUB_141 | 1/XA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_37824.8 | |
| HL_4TUB_142 | 1/XV/12:22 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4TUB_143 | 1/XV/31:39 | tRNA anticodon loop | homologous HL_5E81_212 HL_06059.7 | |
| HL_4TUB_144 | 1/XV/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4TUE_035 HL_28252.9 | |
| HL_4TUB_145 | 1/XY/31:39 | tRNA anticodon loop | geometric HL_4V9I_039 HL_06059.7 | |
| HL_4TUB_146 | 1/YA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4TUB_147 | 1/YA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4TUB_148 | 1/YA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4TUB_149 | 1/YA/137A:141A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4TUB_151 | 1/YA/194:201 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4TUB_152 | 1/YA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4TUB_153 | 1/YA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4TUB_154 | 1/YA/270K:270N | No text annotation | geometric HL_5TBW_068 NA | |
| HL_4TUB_223 | 1/YA/270:270 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_4TUB_155 | 1/YA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4TUB_156 | 1/YA/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4TUB_157 | 1/YA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4TUB_224 | 1/YA/383:391 | No text annotation | ||
| HL_4TUB_159 | 1/YA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4TUB_160 | 1/YA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4TUB_161 | 1/YA/487:493 | GNRA | homologous HL_4WF9_016 HL_37824.8 | |
| HL_4TUB_162 | 1/YA/544:549 | GNRA | geometric HL_4C7O_001 HL_37824.8 | |
| HL_4TUB_163 | 1/YA/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4TUB_164 | 1/YA/611:617 | No text annotation | homologous HL_7A0S_019 HL_47787.2 | |
| HL_4TUB_165 | 1/YA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4TUB_166 | 1/YA/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4TUB_168 | 1/YA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4TUB_169 | 1/YA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4TUB_170 | 1/YA/779:785 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4TUB_171 | 1/YA/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_4TUB_172 | 1/YA/884:892 | No text annotation | ||
| HL_4TUB_173 | 1/YA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4TUB_174 | 1/YA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4TUB_175 | 1/YA/1064:1074 | No text annotation | homologous HL_5J7L_161 HL_19210.3 | |
| HL_4TUB_177 | 1/YA/1171:1178 | No text annotation | geometric HL_7RQB_009 NA | |
| HL_4TUB_178 | 1/YA/1223:1228 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4TUB_179 | 1/YA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4TUB_180 | 1/YA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4TUB_181 | 1/YA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4TUB_182 | 1/YA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4TUB_183 | 1/YA/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_4TUB_184 | 1/YA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4TUB_185 | 1/YA/1533:1538 | No text annotation | ||
| HL_4TUB_186 | 1/YA/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_4TUB_187 | 1/YA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4TUB_188 | 1/YA/1630A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4TUB_189 | 1/YA/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.5 | |
| HL_4TUB_190 | 1/YA/1727:1733 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4TUB_191 | 1/YA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4TUB_192 | 1/YA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4TUB_193 | 1/YA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4TUB_194 | 1/YA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4TUB_195 | 1/YA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4TUB_196 | 1/YA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4TUB_197 | 1/YA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4TUB_199 | 1/YA/2209:2215 | No text annotation | geometric HL_5TBW_004 NA | |
| HL_4TUB_200 | 1/YA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4TUB_201 | 1/YA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4TUB_229 | 1/YA/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_4TUB_203 | 1/YA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4TUB_204 | 1/YA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4TUB_205 | 1/YA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4TUB_206 | 1/YA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4TUB_207 | 1/YA/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_4TUB_208 | 1/YA/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4TUB_209 | 1/YA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4TUB_210 | 1/YA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4TUB_211 | 1/YA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4TUB_212 | 1/YA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4TUB_213 | 1/YA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4TUB_215 | 1/YA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4TUB_216 | 1/YA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4TUB_225 | 1/YB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4TUB_217 | 1/YB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_4TUB_218 | 1/YB/86:90 | GNRA | homologous HL_5TBW_186 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4TUB_002 | No text annotation | ||
| HL_4TUB_004 | No text annotation | ||
| HL_4TUB_041 | No text annotation | ||
| HL_4TUB_058 | No text annotation | ||
| HL_4TUB_066 | No text annotation | ||
| HL_4TUB_089 | No text annotation | ||
| HL_4TUB_093 | No text annotation | ||
| HL_4TUB_105 | UNCG variation | ||
| HL_4TUB_111 | No text annotation | ||
| HL_4TUB_113 | No text annotation | ||
| HL_4TUB_222 | No text annotation | ||
| HL_4TUB_228 | No text annotation | ||
| HL_4TUB_132 | No text annotation | ||
| HL_4TUB_150 | No text annotation | ||
| HL_4TUB_158 | No text annotation | ||
| HL_4TUB_167 | No text annotation | ||
| HL_4TUB_176 | No text annotation | ||
| HL_4TUB_198 | No text annotation | ||
| HL_4TUB_202 | No text annotation | ||
| HL_4TUB_214 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4TUB_001 | 1/QA/30:32, 1/QA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4TUB_002 | 1/QA/44:45, 1/QA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4TUB_003 | 1/QA/47:52, 1/QA/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4TUB_004 | 1/QA/54:56, 1/QA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4TUB_005 | 1/QA/63:66, 1/QA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.5 | |
| IL_4TUB_006 | 1/QA/67:69, 1/QA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4TUB_007 | 1/QA/129:131, 1/QA/231:232 | Minor groove platform | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4TUB_008 | 1/QA/132:136, 1/QA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4TUB_009 | 1/QA/148:153, 1/QA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4TUB_344 | 1/QA/186:186, 1/QA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4TUB_011 | 1/QA/242:247, 1/QA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4TUB_012 | 1/QA/249:252, 1/QA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4TUB_013 | 1/QA/292:293, 1/QA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4TUB_014 | 1/QA/367:369, 1/QA/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4TUB_015 | 1/QA/371:375, 1/QA/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_4TUB_016 | 1/QA/375:376, 1/QA/387:389 | Single bulged G | geometric IL_4LFB_016 IL_00225.14 | |
| IL_4TUB_017 | 1/QA/409:416, 1/QA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4TUB_018 | 1/QA/446:450, 1/QA/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_4TUB_019 | 1/QA/450:455, 1/QA/477:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4TUB_020 | 1/QA/504:511, 1/QA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4TUB_021 | 1/QA/515:521, 1/QA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4TUB_022 | 1/QA/569:575, 1/QA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4TUB_023 | 1/QA/580:584, 1/QA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4TUB_024 | 1/QA/594:596, 1/QA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4TUB_025 | 1/QA/597:598, 1/QA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4TUB_026 | 1/QA/605:612, 1/QA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4TUB_027 | 1/QA/654:655, 1/QA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_4TUB_028 | 1/QA/657:658, 1/QA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4TUB_029 | 1/QA/662:666, 1/QA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4TUB_346 | 1/QA/673:677, 1/QA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4TUB_031 | 1/QA/683:688, 1/QA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4TUB_032 | 1/QA/774:778, 1/QA/804:805 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4TUB_033 | 1/QA/779:783, 1/QA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4TUB_034 | 1/QA/887:894, 1/QA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4TUB_035 | 1/QA/922:923, 1/QA/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.7 | |
| IL_4TUB_036 | 1/QA/925:927, 1/QA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_4TUB_037 | 1/QA/933:935, 1/QA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4TUB_038 | 1/QA/953:954, 1/QA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4TUB_039 | 1/QA/993:997, 1/QA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4TUB_040 | 1/QA/1048:1050, 1/QA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4TUB_041 | 1/QA/1052:1056, 1/QA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4TUB_042 | 1/QA/1057:1058, 1/QA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_4TUB_043 | 1/QA/1060:1061, 1/QA/1195:1197 | Single bulged U | homologous IL_6CZR_156 NA | |
| IL_4TUB_044 | 1/QA/1061:1063, 1/QA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4TUB_045 | 1/QA/1123:1132, 1/QA/1142:1150 | No text annotation | ||
| IL_4TUB_046 | 1/QA/1247:1253, 1/QA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4TUB_047 | 1/QA/1255:1258, 1/QA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4TUB_048 | 1/QA/1259:1260, 1/QA/1274:1276 | Not an internal loop | homologous IL_4LFB_053 NA | |
| IL_4TUB_347 | 1/QA/1259:1262, 1/QA/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4TUB_049 | 1/QA/1260:1262, 1/QA/1273:1274 | Minor groove platform | geometric IL_4LFB_054 IL_51454.3 | |
| IL_4TUB_050 | 1/QA/1303:1308, 1/QA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_4TUB_051 | 1/QA/1399:1401, 1/QA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4TUB_052 | 1/QA/1401:1404, 1/QA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4TUB_053 | 1/QA/1405:1407, 1/QA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4TUB_054 | 1/QA/1407:1409, 1/QA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4TUB_055 | 1/QA/1412:1414, 1/QA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4TUB_056 | 1/QA/1416:1419, 1/QA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4TUB_057 | 1/QA/1431:1435, 1/QA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4TUB_058 | 1/QA/1435:1437, 1/QA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4TUB_059 | 1/QA/1440:1447, 1/QA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4TUB_060 | 1/RA/24:30, 1/RA/535:541 | Triple sheared with non-canonical cWW | geometric IL_7RQB_001 NA | |
| IL_4TUB_061 | 1/RA/36:37, 1/RA/468:470 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4TUB_363 | 1/RA/42:43, 1/RA/461:463 | Minor groove platform | homologous IL_9DFE_348 IL_51454.3 | |
| IL_4TUB_063 | 1/RA/80:84, 1/RA/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4TUB_064 | 1/RA/172:173, 1/RA/201:203 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4TUB_065 | 1/RA/177:183, 1/RA/190:197 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4TUB_066 | 1/RA/228:234, 1/RA/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4TUB_067 | 1/RA/291:292, 1/RA/392:394 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4TUB_364 | 1/RA/297:302, 1/RA/386:387 | No text annotation | ||
| IL_4TUB_069 | 1/RA/304:308, 1/RA/381:384 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4TUB_070 | 1/RA/312:314, 1/RA/374:377 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4TUB_071 | 1/RA/317:319, 1/RA/367:371 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4TUB_072 | 1/RA/507:510, 1/RA/521:534 | No text annotation | geometric IL_7RQB_014 NA | |
| IL_4TUB_073 | 1/RA/587:589, 1/RA/598:600 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_4TUB_074 | 1/RA/629:633, 1/RA/643:647 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4TUB_075 | 1/RA/719:721, 1/RA/853:855 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_4TUB_076 | 1/RA/721:725, 1/RA/846:853 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4TUB_077 | 1/RA/744:745, 1/RA/810:812 | Single bulged A | geometric IL_4WF9_022 IL_31462.7 | |
| IL_4TUB_078 | 1/RA/749:750, 1/RA/775:777 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4TUB_079 | 1/RA/750:754, 1/RA/771:775 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4TUB_080 | 1/RA/785:788, 1/RA/803:805 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4TUB_081 | 1/RA/822:824, 1/RA/834:838 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
| IL_4TUB_082 | 1/RA/884:885, 1/RA/985:987 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_4TUB_083 | 1/RA/891:893, 1/RA/976:979 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4TUB_348 | 1/RA/891:897, 1/RA/973:979 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4TUB_084 | 1/RA/893:897, 1/RA/973:976 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4TUB_085 | 1/RA/905:909, 1/RA/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4TUB_086 | 1/RA/909:910, 1/RA/959:961 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_4TUB_087 | 1/RA/911:915, 1/RA/955:958 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4TUB_088 | 1/RA/922:926, 1/RA/944:948 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4TUB_089 | 1/RA/927:928, 1/RA/941:943 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4TUB_090 | 1/RA/997:999, 1/RA/1008:1010 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4TUB_091 | 1/RA/1040:1042, 1/RA/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4TUB_092 | 1/RA/1044:1048, 1/RA/1199:1203 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4TUB_093 | 1/RA/1050:1057, 1/RA/1196:1197 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4TUB_094 | 1/RA/1057:1059, 1/RA/1195:1196 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_4TUB_095 | 1/RA/1064:1070, 1/RA/1185:1190 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4TUB_096 | 1/RA/1070:1076, 1/RA/1170:1185 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4TUB_097 | 1/RA/1077:1080, 1/RA/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4TUB_098 | 1/RA/1089:1097, 1/RA/1154:1158 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4TUB_365 | 1/RA/1104:1108, 1/RA/1122:1126 | No text annotation | ||
| IL_4TUB_100 | 1/RA/1241:1243, 1/RA/1293:1296 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4TUB_101 | 1/RA/1247:1251, 1/RA/1286:1289 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4TUB_102 | 1/RA/1253:1260, 1/RA/1280:1284 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4TUB_103 | 1/RA/1264:1266, 1/RA/1275:1276 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4TUB_104 | 1/RA/1308:1315, 1/RA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4TUB_105 | 1/RA/1356:1359, 1/RA/1649:1650 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4TUB_349 | 1/RA/1365:1369, 1/RA/1377:1379 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_4TUB_107 | 1/RA/1397:1401, 1/RA/1422:1426 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4TUB_108 | 1/RA/1403:1407, 1/RA/1416:1420 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4TUB_109 | 1/RA/1461:1462, 1/RA/1629:1633 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4TUB_110 | 1/RA/1463:1467, 1/RA/1624:1628 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_4TUB_111 | 1/RA/1479:1481, 1/RA/1604:1607 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4TUB_112 | 1/RA/1483:1486, 1/RA/1598:1602 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4TUB_113 | 1/RA/1495:1497, 1/RA/1509:1510 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4TUB_114 | 1/RA/1498:1499, 1/RA/1506:1508 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4TUB_115 | 1/RA/1516:1520, 1/RA/1566:1569 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4TUB_116 | 1/RA/1528:1529, 1/RA/1552:1558 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4TUB_117 | 1/RA/1535:1537, 1/RA/1545:1546 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4TUB_118 | 1/RA/1572:1576, 1/RA/1587:1593 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4TUB_119 | 1/RA/1698:1703, 1/RA/2026:2028 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4TUB_120 | 1/RA/1710:1712, 1/RA/2017:2019 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4TUB_121 | 1/RA/1713:1716, 1/RA/2015:2016 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4TUB_350 | 1/RA/1713:1721, 1/RA/2012:2016 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4TUB_122 | 1/RA/1716:1721, 1/RA/2012:2015 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4TUB_123 | 1/RA/1733:1738, 1/RA/1743:1749 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4TUB_124 | 1/RA/1801:1802, 1/RA/2002:2004 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4TUB_125 | 1/RA/1829:1835, 1/RA/1844:1852 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4TUB_126 | 1/RA/1868:1871, 1/RA/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4TUB_127 | 1/RA/1872:1873, 1/RA/1920:1923 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4TUB_128 | 1/RA/1877:1880, 1/RA/1915:1916 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4TUB_129 | 1/RA/1882:1886, 1/RA/1909:1913 | UAA/GAN with extra pair | homologous IL_4WF9_073 IL_89021.2 | |
| IL_4TUB_130 | 1/RA/1887:1891, 1/RA/1904:1908 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4TUB_131 | 1/RA/1955:1956, 1/RA/1986:1989 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_4TUB_132 | 1/RA/1956:1967, 1/RA/1983:1986 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_4TUB_133 | 1/RA/2072:2074, 1/RA/2629:2630 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4TUB_134 | 1/RA/2076:2079, 1/RA/2623:2627 | No text annotation | homologous IL_7RQB_079 NA | |
| IL_4TUB_135 | 1/RA/2089:2091, 1/RA/2454:2455 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4TUB_136 | 1/RA/2092:2093, 1/RA/2450:2453 | Minor groove platform | homologous IL_4WF9_081 IL_51454.3 | |
| IL_4TUB_137 | 1/RA/2103:2105, 1/RA/2248:2251 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4TUB_138 | 1/RA/2107:2109, 1/RA/2244:2246 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4TUB_140 | 1/RA/2132:2142, 1/RA/2200:2201 | No text annotation | ||
| IL_4TUB_143 | 1/RA/2309:2311, 1/RA/2329:2333 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4TUB_144 | 1/RA/2362:2365, 1/RA/2376:2379 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4TUB_145 | 1/RA/2413:2415, 1/RA/2426:2427 | No text annotation | ||
| IL_4TUB_146 | 1/RA/2465:2466, 1/RA/2510:2512 | Single stack bend | geometric IL_7A0S_083 IL_26793.1 | |
| IL_4TUB_147 | 1/RA/2466:2467, 1/RA/2508:2510 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4TUB_148 | 1/RA/2469:2471, 1/RA/2505:2506 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4TUB_149 | 1/RA/2471:2473, 1/RA/2501:2505 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4TUB_150 | 1/RA/2478:2482, 1/RA/2492:2496 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4TUB_151 | 1/RA/2519:2520, 1/RA/2592:2594 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4TUB_152 | 1/RA/2522:2524, 1/RA/2586:2590 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
| IL_4TUB_153 | 1/RA/2524:2525, 1/RA/2583:2586 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4TUB_154 | 1/RA/2534:2535, 1/RA/2552:2555 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4TUB_155 | 1/RA/2603:2604, 1/RA/2613:2615 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4TUB_156 | 1/RA/2648:2652, 1/RA/2787:2795 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4TUB_157 | 1/RA/2664:2670, 1/RA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_4WF9_100 IL_16458.4 | |
| IL_4TUB_158 | 1/RA/2692:2696, 1/RA/2738:2740 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4TUB_159 | 1/RA/2699:2703, 1/RA/2731:2735 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4TUB_160 | 1/RA/2707:2708, 1/RA/2723:2727 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4TUB_161 | 1/RA/2750:2755, 1/RA/2775:2780 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4TUB_162 | 1/RA/2848:2849, 1/RA/2888:2890 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4TUB_163 | 1/RA/2853:2856, 1/RA/2880:2884 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4TUB_164 | 1/RA/2857:2862, 1/RA/2875:2879 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4TUB_165 | 1/RB/17:18, 1/RB/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_31462.7 | |
| IL_4TUB_166 | 1/RB/23:28, 1/RB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4TUB_167 | 1/RB/30:31, 1/RB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4TUB_168 | 1/RB/34:38, 1/RB/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4TUB_169 | 1/RB/71:79, 1/RB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4TUB_170 | 1/XA/30:32, 1/XA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.14 | |
| IL_4TUB_171 | 1/XA/44:45, 1/XA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.7 | |
| IL_4TUB_172 | 1/XA/47:52, 1/XA/359:361 | No text annotation | geometric IL_4LFB_003 IL_14177.2 | |
| IL_4TUB_173 | 1/XA/54:56, 1/XA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_4TUB_174 | 1/XA/63:66, 1/XA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.5 | |
| IL_4TUB_175 | 1/XA/67:69, 1/XA/99:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4TUB_176 | 1/XA/129:131, 1/XA/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_4TUB_177 | 1/XA/132:136, 1/XA/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4TUB_178 | 1/XA/148:153, 1/XA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4TUB_353 | 1/XA/186:186, 1/XA/191:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4TUB_180 | 1/XA/242:247, 1/XA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4TUB_181 | 1/XA/249:252, 1/XA/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4TUB_182 | 1/XA/292:293, 1/XA/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4TUB_183 | 1/XA/367:369, 1/XA/392:393 | Single bulged U | geometric IL_4LFB_014 IL_89505.4 | |
| IL_4TUB_184 | 1/XA/371:375, 1/XA/389:390 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_4TUB_185 | 1/XA/375:376, 1/XA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_00225.14 | |
| IL_4TUB_186 | 1/XA/409:416, 1/XA/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4TUB_187 | 1/XA/446:450, 1/XA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4TUB_188 | 1/XA/450:455, 1/XA/477:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4TUB_189 | 1/XA/504:511, 1/XA/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_4TUB_190 | 1/XA/515:521, 1/XA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4TUB_191 | 1/XA/569:575, 1/XA/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_4TUB_192 | 1/XA/580:584, 1/XA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4TUB_193 | 1/XA/594:596, 1/XA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4TUB_194 | 1/XA/597:598, 1/XA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4TUB_195 | 1/XA/605:612, 1/XA/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4TUB_196 | 1/XA/654:655, 1/XA/751:754 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_50694.7 | |
| IL_4TUB_197 | 1/XA/657:658, 1/XA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4TUB_198 | 1/XA/662:666, 1/XA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4TUB_356 | 1/XA/673:677, 1/XA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_4TUB_200 | 1/XA/683:688, 1/XA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4TUB_201 | 1/XA/774:778, 1/XA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_4TUB_202 | 1/XA/779:783, 1/XA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4TUB_203 | 1/XA/887:894, 1/XA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4TUB_204 | 1/XA/922:923, 1/XA/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.7 | |
| IL_4TUB_205 | 1/XA/925:927, 1/XA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.14 | |
| IL_4TUB_206 | 1/XA/933:935, 1/XA/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4TUB_207 | 1/XA/953:954, 1/XA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_4TUB_208 | 1/XA/993:997, 1/XA/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_4TUB_209 | 1/XA/1048:1050, 1/XA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4TUB_210 | 1/XA/1052:1056, 1/XA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4TUB_211 | 1/XA/1057:1058, 1/XA/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4TUB_212 | 1/XA/1060:1061, 1/XA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_4TUB_213 | 1/XA/1061:1063, 1/XA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_28037.2 | |
| IL_4TUB_214 | 1/XA/1124:1128, 1/XA/1143:1149 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4TUB_357 | 1/XA/1124:1132, 1/XA/1142:1149 | No text annotation | ||
| IL_4TUB_215 | 1/XA/1128:1132, 1/XA/1142:1143 | Minor groove platform | geometric IL_4LFB_049 IL_15052.4 | |
| IL_4TUB_216 | 1/XA/1247:1253, 1/XA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4TUB_217 | 1/XA/1255:1258, 1/XA/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_4TUB_218 | 1/XA/1259:1260, 1/XA/1274:1276 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_4TUB_358 | 1/XA/1259:1262, 1/XA/1273:1276 | Double sheared | homologous IL_4LFB_067 IL_09705.15 | |
| IL_4TUB_219 | 1/XA/1260:1262, 1/XA/1273:1274 | Minor groove platform | homologous IL_4LFB_054 IL_51454.3 | |
| IL_4TUB_220 | 1/XA/1303:1308, 1/XA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4TUB_221 | 1/XA/1399:1401, 1/XA/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4TUB_222 | 1/XA/1401:1404, 1/XA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4TUB_223 | 1/XA/1405:1407, 1/XA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4TUB_224 | 1/XA/1407:1409, 1/XA/1491:1494 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4TUB_225 | 1/XA/1412:1414, 1/XA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4TUB_226 | 1/XA/1416:1419, 1/XA/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4TUB_227 | 1/XA/1431:1435, 1/XA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_4TUB_228 | 1/XA/1435:1437, 1/XA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_4TUB_229 | 1/XA/1440:1447, 1/XA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4TUB_230 | 1/YA/24:30, 1/YA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4TUB_231 | 1/YA/36:37, 1/YA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4TUB_232 | 1/YA/43:44, 1/YA/434:436 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4TUB_233 | 1/YA/81:85, 1/YA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4TUB_234 | 1/YA/183:184, 1/YA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4TUB_235 | 1/YA/188:194, 1/YA/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4TUB_236 | 1/YA/239:245, 1/YA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4TUB_237 | 1/YA/270J:270K, 1/YA/270N:270P | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4TUB_239 | 1/YA/273:273A, 1/YA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4TUB_366 | 1/YA/273F:278, 1/YA/362:363 | No text annotation | ||
| IL_4TUB_241 | 1/YA/280:284, 1/YA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4TUB_242 | 1/YA/288:290, 1/YA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4TUB_243 | 1/YA/293:295, 1/YA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4TUB_244 | 1/YA/481:484, 1/YA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4TUB_245 | 1/YA/564:566, 1/YA/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_07785.1 | |
| IL_4TUB_246 | 1/YA/606:609A, 1/YA/618A:622 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4TUB_247 | 1/YA/672:674, 1/YA/806:808 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_4TUB_248 | 1/YA/674:678, 1/YA/799:806 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4TUB_249 | 1/YA/697:698, 1/YA/763:765 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4TUB_250 | 1/YA/702:703, 1/YA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4TUB_251 | 1/YA/703:707, 1/YA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4TUB_252 | 1/YA/738:741, 1/YA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4TUB_253 | 1/YA/775:777, 1/YA/787:791 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
| IL_4TUB_254 | 1/YA/837:838, 1/YA/940:942 | Single stack bend | homologous IL_5J7L_266 IL_90729.1 | |
| IL_4TUB_255 | 1/YA/844:846, 1/YA/931:934 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4TUB_359 | 1/YA/844:850, 1/YA/928:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4TUB_256 | 1/YA/846:850, 1/YA/928:931 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4TUB_257 | 1/YA/858:862, 1/YA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7RQB_027 NA | |
| IL_4TUB_258 | 1/YA/862:863, 1/YA/913:915 | Minor groove platform | homologous IL_4WF9_032 IL_51454.3 | |
| IL_4TUB_259 | 1/YA/864:868, 1/YA/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_4TUB_261 | 1/YA/875:879, 1/YA/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_4TUB_262 | 1/YA/880:881, 1/YA/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_4TUB_263 | 1/YA/952:954, 1/YA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4TUB_264 | 1/YA/994:996, 1/YA/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4TUB_265 | 1/YA/998:1002, 1/YA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4TUB_266 | 1/YA/1004:1011, 1/YA/1150:1151 | SSU/LSU pseudoknot | homologous IL_7RQB_037 NA | |
| IL_4TUB_267 | 1/YA/1011:1013, 1/YA/1149:1150 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_4TUB_268 | 1/YA/1018:1024, 1/YA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4TUB_269 | 1/YA/1024:1030, 1/YA/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4TUB_270 | 1/YA/1031:1034, 1/YA/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4TUB_271 | 1/YA/1043:1051, 1/YA/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_4TUB_367 | 1/YA/1058:1062, 1/YA/1076:1080 | No text annotation | ||
| IL_4TUB_273 | 1/YA/1087:1091, 1/YA/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_4TUB_274 | 1/YA/1196:1198, 1/YA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4TUB_275 | 1/YA/1202:1206, 1/YA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4TUB_276 | 1/YA/1208:1215, 1/YA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4TUB_277 | 1/YA/1219:1221, 1/YA/1229A:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4TUB_278 | 1/YA/1262:1269, 1/YA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4TUB_279 | 1/YA/1310:1313, 1/YA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4TUB_280 | 1/YA/1319:1323, 1/YA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4TUB_281 | 1/YA/1351:1355, 1/YA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4TUB_282 | 1/YA/1357:1361, 1/YA/1370:1374 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_17136.7 | |
| IL_4TUB_283 | 1/YA/1415:1416, 1/YA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4TUB_284 | 1/YA/1417:1421, 1/YA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4TUB_285 | 1/YA/1433:1435, 1/YA/1557:1560 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
| IL_4TUB_286 | 1/YA/1437:1440, 1/YA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4TUB_287 | 1/YA/1448:1449A, 1/YA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4TUB_288 | 1/YA/1450:1451, 1/YA/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_4TUB_289 | 1/YA/1469:1473, 1/YA/1520:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4TUB_290 | 1/YA/1482:1483, 1/YA/1506:1512 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4TUB_291 | 1/YA/1489:1491, 1/YA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4TUB_292 | 1/YA/1526:1530, 1/YA/1541:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4TUB_293 | 1/YA/1651:1656, 1/YA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4TUB_294 | 1/YA/1663:1665, 1/YA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4TUB_295 | 1/YA/1666:1669, 1/YA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4TUB_360 | 1/YA/1666:1674, 1/YA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4TUB_296 | 1/YA/1669:1674, 1/YA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4TUB_297 | 1/YA/1686:1691, 1/YA/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4TUB_298 | 1/YA/1770:1771, 1/YA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4TUB_299 | 1/YA/1798:1804, 1/YA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4TUB_300 | 1/YA/1837:1840, 1/YA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_4TUB_301 | 1/YA/1841:1842, 1/YA/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.5 | |
| IL_4TUB_302 | 1/YA/1846:1849, 1/YA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4TUB_303 | 1/YA/1851:1855, 1/YA/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4TUB_304 | 1/YA/1856:1860, 1/YA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4TUB_305 | 1/YA/1933:1934, 1/YA/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_4TUB_306 | 1/YA/1934:1945, 1/YA/1961:1964 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4TUB_307 | 1/YA/2050:2052, 1/YA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4TUB_308 | 1/YA/2054:2057, 1/YA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4TUB_309 | 1/YA/2067:2069, 1/YA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4TUB_310 | 1/YA/2070:2071, 1/YA/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4TUB_311 | 1/YA/2081:2083, 1/YA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4TUB_312 | 1/YA/2085:2087, 1/YA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4TUB_317 | 1/YA/2297:2299, 1/YA/2317:2321 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4TUB_318 | 1/YA/2350:2353, 1/YA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4TUB_319 | 1/YA/2401:2403, 1/YA/2414:2415 | No text annotation | ||
| IL_4TUB_320 | 1/YA/2453:2454, 1/YA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4TUB_321 | 1/YA/2454:2455, 1/YA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4TUB_322 | 1/YA/2457:2459, 1/YA/2493:2494 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_4TUB_323 | 1/YA/2459:2461, 1/YA/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4TUB_324 | 1/YA/2466:2470, 1/YA/2480:2484 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
| IL_4TUB_325 | 1/YA/2507:2508, 1/YA/2580:2582 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4TUB_326 | 1/YA/2510:2512, 1/YA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4TUB_327 | 1/YA/2512:2513, 1/YA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4TUB_328 | 1/YA/2522:2523, 1/YA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4TUB_329 | 1/YA/2591:2592, 1/YA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4TUB_330 | 1/YA/2636:2640, 1/YA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4TUB_331 | 1/YA/2652:2658, 1/YA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4TUB_332 | 1/YA/2680:2684, 1/YA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4TUB_333 | 1/YA/2687:2691, 1/YA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4TUB_334 | 1/YA/2695:2696, 1/YA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4TUB_335 | 1/YA/2737:2742, 1/YA/2762:2767 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4TUB_336 | 1/YA/2838:2839, 1/YA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4TUB_337 | 1/YA/2843:2846, 1/YA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4TUB_338 | 1/YA/2847:2852, 1/YA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4TUB_339 | 1/YB/17:18, 1/YB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4TUB_340 | 1/YB/23:28, 1/YB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4TUB_341 | 1/YB/30:31, 1/YB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4TUB_342 | 1/YB/34:38, 1/YB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4TUB_343 | 1/YB/71:79, 1/YB/97:105 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4TUB_010 | No text annotation | ||
| IL_4TUB_345 | Major groove platform with extra cWW | ||
| IL_4TUB_030 | No text annotation | ||
| IL_4TUB_062 | Major groove platform with extra cWW | ||
| IL_4TUB_068 | No text annotation | ||
| IL_4TUB_099 | No text annotation | ||
| IL_4TUB_106 | C-loop with extra cWW pair | ||
| IL_4TUB_139 | Isolated non-canonical cWW pair | ||
| IL_4TUB_351 | No text annotation | ||
| IL_4TUB_141 | No text annotation | ||
| IL_4TUB_142 | Kink-turn | ||
| IL_4TUB_352 | Isolated non-canonical cWW pair | ||
| IL_4TUB_179 | No text annotation | ||
| IL_4TUB_354 | No text annotation | ||
| IL_4TUB_355 | Major groove platform with extra cWW | ||
| IL_4TUB_199 | No text annotation | ||
| IL_4TUB_238 | No text annotation | ||
| IL_4TUB_240 | No text annotation | ||
| IL_4TUB_260 | Isolated cWS basepair | ||
| IL_4TUB_272 | No text annotation | ||
| IL_4TUB_313 | No text annotation | ||
| IL_4TUB_314 | Multiple bulged bases | ||
| IL_4TUB_315 | No text annotation | ||
| IL_4TUB_361 | No text annotation | ||
| IL_4TUB_316 | Kink-turn | ||
| IL_4TUB_362 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4TUB_001 | 1/QA/46:47, 1/QA/361:367, 1/QA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4TUB_056 | 1/QA/46:52, 1/QA/359:367, 1/QA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4TUB_002 | 1/QA/586:588, 1/QA/651:654, 1/QA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4TUB_057 | 1/QA/586:588, 1/QA/651:655, 1/QA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4TUB_003 | 1/QA/672:673, 1/QA/717:725, 1/QA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4TUB_004 | 1/QA/826:829, 1/QA/857:861, 1/QA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4TUB_005 | 1/QA/936:939, 1/QA/1344:1350, 1/QA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4TUB_006 | 1/QA/943:946, 1/QA/1235:1237, 1/QA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4TUB_007 | 1/QA/955:962, 1/QA/973:984, 1/QA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4TUB_008 | 1/QA/990:993, 1/QA/1045:1047, 1/QA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4TUB_058 | 1/QA/990:997, 1/QA/1044:1047, 1/QA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4TUB_074 | 1/QA/1003:1006, 1/QA/1023:1027, 1/QA/1034:1037 | No text annotation | ||
| J3_4TUB_010 | 1/QA/1063:1068, 1/QA/1107:1113, 1/QA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4TUB_059 | 1/QA/1073:1074, 1/QA/1083:1086, 1/QA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4TUB_012 | 1/QA/1116:1118, 1/QA/1155:1161, 1/QA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4TUB_013 | 1/QA/1237:1241, 1/QA/1296:1303, 1/QA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4TUB_014 | 1/RA/30:31, 1/RA/500:507, 1/RA/534:535 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4TUB_060 | 1/RA/30:31, 1/RA/500:510, 1/RA/521:535 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_4TUB_061 | 1/RA/32:35, 1/RA/471:487, 1/RA/494:499 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4TUB_015 | 1/RA/55:56, 1/RA/69:75, 1/RA/108:112 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_4TUB_016 | 1/RA/258:262, 1/RA/282:289, 1/RA/396:397 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_4TUB_017 | 1/RA/730:736, 1/RA/820:822, 1/RA/838:841 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4TUB_018 | 1/RA/745:747, 1/RA/779:783, 1/RA/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4TUB_019 | 1/RA/1101:1103, 1/RA/1127:1137, 1/RA/1146:1150 | No text annotation | ||
| J3_4TUB_020 | 1/RA/1344:1349, 1/RA/1671:1673, 1/RA/1686:1689 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4TUB_021 | 1/RA/1352:1355, 1/RA/1651:1657, 1/RA/1666:1668 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4TUB_022 | 1/RA/1390:1396, 1/RA/1427:1431, 1/RA/1448:1449 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4TUB_062 | 1/RA/1470:1475, 1/RA/1611:1612, 1/RA/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4TUB_023 | 1/RA/2113:2115, 1/RA/2218:2222, 1/RA/2235:2240 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4TUB_063 | 1/RA/2294:2296, 1/RA/2396:2407, 1/RA/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4TUB_024 | 1/RA/2307:2309, 1/RA/2333:2335, 1/RA/2344:2349 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4TUB_025 | 1/RA/2529:2532, 1/RA/2557:2559, 1/RA/2573:2579 | No text annotation | homologous J3_9DFE_017 J3_32601.5 | |
| J3_4TUB_026 | 1/RA/2824:2825, 1/RA/2841:2846, 1/RA/2892:2896 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_4TUB_027 | 1/RB/11:16, 1/RB/68:69, 1/RB/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_4TUB_028 | 1/XA/46:47, 1/XA/361:367, 1/XA/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_4TUB_064 | 1/XA/46:52, 1/XA/359:367, 1/XA/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4TUB_029 | 1/XA/586:588, 1/XA/651:654, 1/XA/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_4TUB_065 | 1/XA/586:588, 1/XA/651:655, 1/XA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4TUB_030 | 1/XA/672:673, 1/XA/717:725, 1/XA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4TUB_031 | 1/XA/826:829, 1/XA/857:861, 1/XA/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4TUB_032 | 1/XA/936:939, 1/XA/1344:1350, 1/XA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4TUB_033 | 1/XA/943:946, 1/XA/1235:1237, 1/XA/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_4TUB_034 | 1/XA/955:962, 1/XA/973:984, 1/XA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4TUB_035 | 1/XA/990:993, 1/XA/1045:1047, 1/XA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4TUB_066 | 1/XA/990:997, 1/XA/1044:1047, 1/XA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4TUB_075 | 1/XA/1003:1006, 1/XA/1023:1027, 1/XA/1034:1037 | No text annotation | ||
| J3_4TUB_037 | 1/XA/1063:1068, 1/XA/1107:1113, 1/XA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4TUB_067 | 1/XA/1073:1074, 1/XA/1083:1086, 1/XA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_4TUB_039 | 1/XA/1116:1118, 1/XA/1155:1161, 1/XA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4TUB_040 | 1/XA/1237:1241, 1/XA/1296:1303, 1/XA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4TUB_041 | 1/YA/30:31, 1/YA/474:481, 1/YA/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_4TUB_068 | 1/YA/30:31, 1/YA/474:484, 1/YA/496:510 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4TUB_069 | 1/YA/32:35, 1/YA/445:461, 1/YA/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4TUB_042 | 1/YA/56:57, 1/YA/70:76, 1/YA/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_4TUB_070 | 1/YA/269:270, 1/YA/270:271, 1/YA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4TUB_071 | 1/YA/297:301, 1/YA/316:325, 1/YA/337:341 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4TUB_044 | 1/YA/683:689, 1/YA/773:775, 1/YA/791:794 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_4TUB_045 | 1/YA/698:700, 1/YA/732:736, 1/YA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4TUB_046 | 1/YA/1055:1057, 1/YA/1081:1087, 1/YA/1102:1104 | No text annotation | homologous J3_6PRV_001 J3_28621.5 | |
| J3_4TUB_047 | 1/YA/1298:1303, 1/YA/1625:1627, 1/YA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4TUB_048 | 1/YA/1306:1309, 1/YA/1605:1611, 1/YA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4TUB_049 | 1/YA/1344:1350, 1/YA/1381:1385, 1/YA/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_4TUB_072 | 1/YA/1424:1429, 1/YA/1564:1565, 1/YA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_4TUB_050 | 1/YA/2091:2093, 1/YA/2196:2205, 1/YA/2219:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4TUB_073 | 1/YA/2282:2284, 1/YA/2384:2395, 1/YA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4TUB_051 | 1/YA/2295:2297, 1/YA/2321:2323, 1/YA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4TUB_052 | 1/YA/2517:2520, 1/YA/2545:2547, 1/YA/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4TUB_053 | 1/YA/2789:2792, 1/YA/2804:2811, 1/YA/2889:2894 | No text annotation | ||
| J3_4TUB_054 | 1/YA/2814:2815, 1/YA/2831:2836, 1/YA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4TUB_055 | 1/YB/11:16, 1/YB/68:69, 1/YB/107:109 | No text annotation | homologous J3_7RQB_015 NA | |
| J4_4TUB_001 | 1/QA/115:122, 1/QA/239:240, 1/QA/286:289, 1/QA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4TUB_002 | 1/QA/142:144, 1/QA/178:183, 1/QA/194:198, 1/QA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4TUB_003 | 1/QA/575:577, 1/QA/764:769, 1/QA/810:821, 1/QA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4TUB_004 | 1/QV/6:9, 1/QV/25:27, 1/QV/43:49, 1/QV/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.29 | |
| J4_4TUB_005 | 1/RA/257:258, 1/RA/397:402, 1/RA/426:433, 1/RA/448:451 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4TUB_006 | 1/RA/321:325, 1/RA/340:343, 1/RA/347:349, 1/RA/361:365 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4TUB_007 | 1/RA/1316:1322, 1/RA/1340:1341, 1/RA/1692:1695, 1/RA/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4TUB_008 | 1/RA/1356:1360, 1/RA/1384:1389, 1/RA/1450:1451, 1/RA/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4TUB_009 | 1/RA/1359:1360, 1/RA/1384:1389, 1/RA/1450:1451, 1/RA/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4TUB_010 | 1/RA/1490:1492, 1/RA/1513:1514, 1/RA/1571:1572, 1/RA/1593:1594 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_4TUB_011 | 1/RA/1803:1807, 1/RA/1819:1823, 1/RA/1858:1861, 1/RA/1997:2001 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_4TUB_012 | 1/RA/1864:1866, 1/RA/1927:1928, 1/RA/1946:1955, 1/RA/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4TUB_013 | 1/RA/2297:2301, 1/RA/2355:2359, 1/RA/2382:2384, 1/RA/2393:2395 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4TUB_014 | 1/RA/2655:2658, 1/RA/2686:2688, 1/RA/2744:2748, 1/RA/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4TUB_015 | 1/XA/115:122, 1/XA/239:240, 1/XA/286:289, 1/XA/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4TUB_016 | 1/XA/142:144, 1/XA/178:183, 1/XA/194:198, 1/XA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4TUB_017 | 1/XA/575:577, 1/XA/764:769, 1/XA/810:821, 1/XA/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4TUB_018 | 1/XV/6:9, 1/XV/25:27, 1/XV/43:49, 1/XV/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.29 | |
| J4_4TUB_019 | 1/YA/268:269, 1/YA/370:375, 1/YA/399:406, 1/YA/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4TUB_020 | 1/YA/297:301, 1/YA/316:319, 1/YA/323:325, 1/YA/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_4TUB_021 | 1/YA/1270:1276, 1/YA/1294:1295, 1/YA/1645:1648, 1/YA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_4TUB_022 | 1/YA/1310:1314, 1/YA/1338:1343, 1/YA/1404:1405, 1/YA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_4TUB_023 | 1/YA/1313:1314, 1/YA/1338:1343, 1/YA/1404:1405, 1/YA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_4TUB_024 | 1/YA/1444:1445, 1/YA/1466:1467, 1/YA/1525:1526, 1/YA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4TUB_025 | 1/YA/1772:1776, 1/YA/1788:1792, 1/YA/1827:1830, 1/YA/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4TUB_026 | 1/YA/1833:1835, 1/YA/1905:1906, 1/YA/1924:1933, 1/YA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4TUB_027 | 1/YA/2285:2289, 1/YA/2343:2347, 1/YA/2370:2372, 1/YA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4TUB_028 | 1/YA/2643:2646, 1/YA/2674:2676, 1/YA/2731:2735, 1/YA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J5_4TUB_001 | 1/QA/36:39, 1/QA/403:406, 1/QA/436:442, 1/QA/492:500, 1/QA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4TUB_002 | 1/QA/58:61, 1/QA/106:113, 1/QA/314:316, 1/QA/337:339, 1/QA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4TUB_003 | 1/RA/46:53, 1/RA/114:119, 1/RA/128:129, 1/RA/148:150, 1/RA/165:167 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4TUB_004 | 1/RA/257:262, 1/RA/282:289, 1/RA/396:402, 1/RA/426:433, 1/RA/448:451 | No text annotation | ||
| J5_4TUB_005 | 1/RA/556:558, 1/RA/583:587, 1/RA/600:602, 1/RA/1307:1308, 1/RA/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4TUB_006 | 1/RA/607:612, 1/RA/715:718, 1/RA/856:859, 1/RA/1240:1241, 1/RA/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4TUB_007 | 1/RA/1721:1729, 1/RA/1753:1754, 1/RA/1782:1783, 1/RA/1787:1795, 1/RA/2010:2012 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4TUB_008 | 1/RA/2079:2086, 1/RA/2458:2465, 1/RA/2512:2519, 1/RA/2594:2600, 1/RA/2618:2623 | No text annotation | ||
| J5_4TUB_009 | 1/RA/2096:2099, 1/RA/2255:2258, 1/RA/2270:2271, 1/RA/2293:2294, 1/RA/2439:2447 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_4TUB_010 | 1/XA/36:39, 1/XA/403:406, 1/XA/436:442, 1/XA/492:500, 1/XA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4TUB_011 | 1/XA/58:61, 1/XA/106:113, 1/XA/314:316, 1/XA/337:339, 1/XA/350:354 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4TUB_012 | 1/YA/47:54, 1/YA/116:121, 1/YA/130:131, 1/YA/148:150, 1/YA/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_4TUB_013 | 1/YA/268:270, 1/YA/270:271, 1/YA/366:375, 1/YA/399:406, 1/YA/421:424 | No text annotation | ||
| J5_4TUB_014 | 1/YA/531:533, 1/YA/560:564, 1/YA/577:579, 1/YA/1261:1262, 1/YA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4TUB_015 | 1/YA/584:589, 1/YA/668:671, 1/YA/809:812, 1/YA/1195:1196, 1/YA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_4TUB_016 | 1/YA/601:604, 1/YA/624:628, 1/YA/635:638, 1/YA/650:654, 1/YA/654:656 | No text annotation | ||
| J5_4TUB_017 | 1/YA/1674:1682, 1/YA/1706:1707, 1/YA/1751:1752, 1/YA/1756:1764, 1/YA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_4TUB_018 | 1/YA/2057:2064, 1/YA/2446:2453, 1/YA/2500:2507, 1/YA/2582:2588, 1/YA/2606:2611 | No text annotation | ||
| J5_4TUB_019 | 1/YA/2074:2077, 1/YA/2243:2246, 1/YA/2258:2259, 1/YA/2281:2282, 1/YA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J6_4TUB_001 | 1/RA/44:45, 1/RA/168:172, 1/RA/203:213, 1/RA/220:224, 1/RA/251:255, 1/RA/453:460 | No text annotation | ||
| J6_4TUB_002 | 1/RA/2096:2099, 1/RA/2255:2258, 1/RA/2270:2271, 1/RA/2293:2296, 1/RA/2396:2407, 1/RA/2433:2447 | No text annotation | ||
| J6_4TUB_003 | 1/YA/45:46, 1/YA/179:183, 1/YA/214:224, 1/YA/231:235, 1/YA/262:266, 1/YA/426:433 | No text annotation | ||
| J6_4TUB_004 | 1/YA/2074:2077, 1/YA/2243:2246, 1/YA/2258:2259, 1/YA/2281:2284, 1/YA/2384:2395, 1/YA/2421:2435 | No text annotation | ||
| J7_4TUB_001 | 1/RA/864:869, 1/RA/882:883, 1/RA/988:991, 1/RA/1016:1022, 1/RA/1033:1037, 1/RA/1209:1210, 1/RA/1230:1235 | No text annotation | ||
| J7_4TUB_002 | 1/YA/8:15, 1/YA/525:531, 1/YA/2018:2023, 1/YA/2040:2043, 1/YA/2625:2630, 1/YA/2788:2789, 1/YA/2894:2895 | No text annotation | ||
| J7_4TUB_003 | 1/YA/817:822, 1/YA/835:836, 1/YA/943:946, 1/YA/971:976, 1/YA/987:991, 1/YA/1163:1164, 1/YA/1185:1190 | No text annotation | ||
| J8_4TUB_002 | 1/RA/8:15, 1/RA/550:556, 1/RA/2040:2045, 1/RA/2062:2065, 1/RA/2637:2642, 1/RA/2801:2806, 1/RA/2814:2821, 1/RA/2899:2904 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4TUB_009 | No text annotation | ||
| J3_4TUB_011 | No text annotation | ||
| J3_4TUB_036 | No text annotation | ||
| J3_4TUB_038 | No text annotation | ||
| J3_4TUB_043 | No text annotation | ||
| J8_4TUB_001 | No text annotation |
Coloring options: