HL_4TUB_048

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

4TUB|1|RA|G|353, 4TUB|1|RA|A|354, 4TUB|1|RA|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_048 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0928

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4TUB|1|RA|G|351
4TUB|1|RA|U|352
4TUB|1|RA|G|353
4TUB|1|RA|A|354
4TUB|1|RA|A|355
4TUB|1|RA|A|356
4TUB|1|RA|G|357
4TUB|1|RA|C|358
4TUB|1|RA|C|359

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24