HL_4TUB_087

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4TUB|1|RA|U|1977

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_087 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1698

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

4TUB|1|RA|G|1971
4TUB|1|RA|G|1972
4TUB|1|RA|U|1973
4TUB|1|RA|A|1974
4TUB|1|RA|A|1975
4TUB|1|RA|G|1976
4TUB|1|RA|U|1977
4TUB|1|RA|U|1978
4TUB|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RO

50S ribosomal protein L14