HL_4TUB_097

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

4TUB|1|RA|U|2418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_097 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0843

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

4TUB|1|RA|C|2416
4TUB|1|RA|G|2417
4TUB|1|RA|U|2418
4TUB|1|RA|G|2419
4TUB|1|RA|U|2420
4TUB|1|RA|G|2421
4TUB|1|RA|G|2422
4TUB|1|RA|A|2423
4TUB|1|RA|A|2424
4TUB|1|RA|G|2425

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15