HL_4TUB_106

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

4TUB|1|RA|A|2830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_106 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0789

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4TUB|1|RA|G|2829
4TUB|1|RA|A|2830
4TUB|1|RA|A|2831
4TUB|1|RA|G|2832
4TUB|1|RA|A|2833
4TUB|1|RA|C|2834
4TUB|1|RA|C|2835
4TUB|1|RA|A|2836
4TUB|1|RA|C|2837

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17