3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
UGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4TUB_116 not in the Motif Atlas
Homologous match to HL_4LFB_007
Geometric discrepancy: 0.106
The information below is about HL_4LFB_007
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4TUB|1|XA|U|296
4TUB|1|XA|G|297
4TUB|1|XA|A|298
4TUB|1|XA|G|299
4TUB|1|XA|A|300
4TUB|1|XA|G|301

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4
Chain XE
30S ribosomal protein S5
Chain XL
30S ribosomal protein S12
Chain XQ
30S ribosomal protein S17

Coloring options:


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