HL_4TUB_178

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_178 not in the Motif Atlas

Homologous match to HL_7RQB_032

Geometric discrepancy: 0.0799

The information below is about HL_7RQB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4TUB|1|YA|C|1223
4TUB|1|YA|G|1224
4TUB|1|YA|C|1225
4TUB|1|YA|G|1226
4TUB|1|YA|A|1227
4TUB|1|YA|G|1228

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21