HL_4TUB_227

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUB_227 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.3688

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4TUB|1|RA|G|2316
4TUB|1|RA|A|2317
4TUB|1|RA|C|2318
4TUB|1|RA|G|2319
4TUB|1|RA|G|2320
4TUB|1|RA|A|2321
4TUB|1|RA|A|2322
4TUB|1|RA|A|2323
4TUB|1|RA|U|2324

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RG

50S ribosomal protein L5