HL_4TUD_066

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4TUD|1|RA|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_066 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5235

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4TUD|1|RA|G|1091
4TUD|1|RA|C|1092
4TUD|1|RA|G|1093
4TUD|1|RA|U|1094
4TUD|1|RA|A|1095
4TUD|1|RA|A|1096
4TUD|1|RA|U|1097
4TUD|1|RA|A|1098
4TUD|1|RA|G|1099
4TUD|1|RA|C|1100

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6