HL_4TUD_085
3D structure
- PDB id
- 4TUD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4TUD|1|RA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4TUD_085 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1378
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4TUD|1|RA|G|1910
4TUD|1|RA|U|1911
4TUD|1|RA|A|1912
4TUD|1|RA|A|1913
4TUD|1|RA|C|1914
4TUD|1|RA|U|1915
4TUD|1|RA|A|1916
4TUD|1|RA|U|1917
4TUD|1|RA|A|1918
4TUD|1|RA|A|1919
4TUD|1|RA|C|1920
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain QV
- Transfer RNA; tRNA
- Chain QX
- messenger RNA
- Chain QY
- A-site ASL-SufJ
Coloring options: