HL_4TUD_091

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4TUD|1|RA|A|2268, 4TUD|1|RA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TUD_091 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0632

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4TUD|1|RA|C|2264
4TUD|1|RA|U|2265
4TUD|1|RA|A|2266
4TUD|1|RA|A|2267
4TUD|1|RA|A|2268
4TUD|1|RA|A|2269
4TUD|1|RA|G|2270
4TUD|1|RA|G|2271
4TUD|1|RA|U|2272
4TUD|1|RA|A|2273
4TUD|1|RA|A|2274
4TUD|1|RA|C|2275
4TUD|1|RA|G|2276

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16