HL_4TZP_007

3D structure

PDB id

4TZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein

Experimental method

X-RAY DIFFRACTION

Resolution

8.5 Å

Loop

Sequence

CUUGCCAAG

Length

9 nucleotides

Bulged bases

4TZP|1|E|U|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4TZP_007 not in the Motif Atlas

Homologous match to HL_4LCK_002

Geometric discrepancy: 0.2504

The information below is about HL_4LCK_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4TZP|1|E|C|30
4TZP|1|E|U|31
4TZP|1|E|U|32
4TZP|1|E|G|33
4TZP|1|E|C|34
4TZP|1|E|C|35
4TZP|1|E|A|36
4TZP|1|E|A|37
4TZP|1|E|G|38

Current chains

Chain E

engineered tRNA

Nearby chains

Chain F

T-box leader