HL_4U1U_005

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4U1U|1|AA|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1U_005 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3807

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

4U1U|1|AA|C|206
4U1U|1|AA|C|207
4U1U|1|AA|U|208
4U1U|1|AA|U|209
4U1U|1|AA|C|210
4U1U|1|AA|G|211
4U1U|1|AA|G|212
4U1U|1|AA|G|213

Current chains

Chain AA

16S rRNA

Nearby chains