Motif HL_13963.1 Version HL_13963.1 of this group appears in releases 3.89 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_163 | 5J7L | 0.8296 | 4 | DA | LSU rRNA | G | 1171 | U | 1173 | G | 1177 | C | 1178 | ncWW | ||
| 2 | HL_5TBW_012 | 5TBW | 0.3650 | 2 | 1 | LSU rRNA | C | 543 | C | 544 | G | 547 | G | 548 | ncWW | ||
| 3 | HL_361D_001 | 361D | 0.3103 | 2 | A | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH | |
| 4 | HL_361D_002 | 361D | 0.2996 | 2 | B | RNA (20-mer) | G | 86 | G | 87 | A | 89|||A | C | 90 | cWW | ntSH | |
| 5 | HL_2ZZM_002 | 2ZZM | 0.0000 | 5 | B | RNA (84-MER) | G | 31 | C | 32 | A | 38 | C | 39 | cWW | ncWW | |
| 6 | HL_1KH6_003 | 1KH6 | 0.4532 | 0 | A | JIIIabc | C | 42 | G | 43 | 5BU | 44 | G | 45 | cWW | cWW | |
| 7 | HL_8C3A_012 | 8C3A | 0.7958 | 4 | 1 | LSU rRNA | G | 539 | C | 540 | C | 543 | C | 546 | cWW | ncWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGCGAC | 2 |
| GCUUAUGC | 1 |
| CCUCGG | 1 |
| GCCUAGGAC | 1 |
| CG(5BU)G | 1 |
| GCUUCUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCGA | 2 |
| CUUAUG | 1 |
| CUCG | 1 |
| CCUAGGA | 1 |
| G(5BU) | 1 |
| CUUCUG | 1 |
Coloring options: