HL_4U1U_228

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1U_228 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2561

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4U1U|1|BA|G|2304
4U1U|1|BA|U|2305
4U1U|1|BA|C|2306
4U1U|1|BA|G|2307
4U1U|1|BA|G|2308
4U1U|1|BA|A|2309
4U1U|1|BA|C|2310
4U1U|1|BA|A|2311
4U1U|1|BA|U|2312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L5