3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
4U1V|1|AA|C|330, 4U1V|1|AA|G|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_008 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.1615
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4U1V|1|AA|A|320
4U1V|1|AA|A|321
4U1V|1|AA|C|322
4U1V|1|AA|U|323
4U1V|1|AA|G|324
4U1V|1|AA|A|325
4U1V|1|AA|G|326
4U1V|1|AA|A|327
4U1V|1|AA|C|328
4U1V|1|AA|A|329
4U1V|1|AA|C|330
4U1V|1|AA|G|331
4U1V|1|AA|G|332
4U1V|1|AA|U|333

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AT
30S ribosomal protein S20

Coloring options:


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