HL_4U1V_043

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4U1V|1|BA|G|329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_043 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.083

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4U1V|1|BA|G|327
4U1V|1|BA|U|328
4U1V|1|BA|G|329
4U1V|1|BA|A|330
4U1V|1|BA|C|331
4U1V|1|BA|A|332
4U1V|1|BA|G|333
4U1V|1|BA|C|334
4U1V|1|BA|C|335

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24