HL_4U1V_058

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4U1V|1|BA|U|958, 4U1V|1|BA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_058 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1242

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4U1V|1|BA|U|955
4U1V|1|BA|G|956
4U1V|1|BA|C|957
4U1V|1|BA|U|958
4U1V|1|BA|A|959
4U1V|1|BA|A|960
4U1V|1|BA|C|961
4U1V|1|BA|G|962

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16