3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
4U1V|1|BA|A|2030, 4U1V|1|BA|A|2031, 4U1V|1|BA|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_082 not in the Motif Atlas
Homologous match to HL_7RQB_050
Geometric discrepancy: 0.1204
The information below is about HL_7RQB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.6
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
6

Unit IDs

4U1V|1|BA|G|2027
4U1V|1|BA|U|2028
4U1V|1|BA|G|2029
4U1V|1|BA|A|2030
4U1V|1|BA|A|2031
4U1V|1|BA|G|2032
4U1V|1|BA|A|2033
4U1V|1|BA|U|2034
4U1V|1|BA|G|2035
4U1V|1|BA|C|2036

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B0
50S ribosomal protein L32
Chain BD
50S ribosomal protein L3
Chain BJ
50S ribosomal protein L13
Chain BR
50S ribosomal protein L21

Coloring options:


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