HL_4U1V_091

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4U1V|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_091 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0893

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4U1V|1|BA|U|2404
4U1V|1|BA|G|2405
4U1V|1|BA|A|2406
4U1V|1|BA|A|2407
4U1V|1|BA|U|2408
4U1V|1|BA|G|2409
4U1V|1|BA|G|2410
4U1V|1|BA|A|2411
4U1V|1|BA|A|2412
4U1V|1|BA|G|2413

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15