3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
4U1V|1|CA|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_128 not in the Motif Atlas
Homologous match to HL_4LFB_025
Geometric discrepancy: 0.1057
The information below is about HL_4LFB_025
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

4U1V|1|CA|G|1089
4U1V|1|CA|U|1090
4U1V|1|CA|U|1091
4U1V|1|CA|A|1092
4U1V|1|CA|A|1093
4U1V|1|CA|G|1094
4U1V|1|CA|U|1095
4U1V|1|CA|C|1096

Current chains

Chain CA
16S rRNA

Nearby chains

Chain CB
30S ribosomal protein S2
Chain CG
30S ribosomal protein S7

Coloring options:


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