HL_4U1V_133

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

4U1V|1|CA|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_133 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.2861

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U1V|1|CA|G|1356
4U1V|1|CA|A|1357
4U1V|1|CA|U|1358
4U1V|1|CA|C|1359
4U1V|1|CA|A|1360
4U1V|1|CA|G|1361
4U1V|1|CA|A|1362
4U1V|1|CA|A|1363
4U1V|1|CA|U|1364
4U1V|1|CA|G|1365
4U1V|1|CA|C|1366

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14