3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_167 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.1367
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

4U1V|1|DA|G|1281
4U1V|1|DA|U|1282
4U1V|1|DA|G|1283
4U1V|1|DA|A|1284
4U1V|1|DA|A|1285
4U1V|1|DA|A|1286
4U1V|1|DA|A|1287
4U1V|1|DA|G|1288
4U1V|1|DA|C|1289

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D0
50S ribosomal protein L32
Chain DN
50S ribosomal protein L17
Chain DS
50S ribosomal protein L22

Coloring options:


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