3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAAGUAG
Length
8 nucleotides
Bulged bases
4U1V|1|DA|G|2529
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U1V_196 not in the Motif Atlas
Homologous match to HL_5J7L_194
Geometric discrepancy: 0.1151
The information below is about HL_5J7L_194
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_31585.3
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

4U1V|1|DA|U|2528
4U1V|1|DA|G|2529
4U1V|1|DA|A|2530
4U1V|1|DA|A|2531
4U1V|1|DA|G|2532
4U1V|1|DA|U|2533
4U1V|1|DA|A|2534
4U1V|1|DA|G|2535

Current chains

Chain DA
23S rRNA

Nearby chains

Chain D4
50S ribosomal protein L36
Chain DG
50S ribosomal protein L6

Coloring options:


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