HL_4U1V_217

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGCGAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U1V_217 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2886

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4U1V|1|CA|U|1264
4U1V|1|CA|C|1265
4U1V|1|CA|G|1266
4U1V|1|CA|C|1267
4U1V|1|CA|G|1268
4U1V|1|CA|A|1269
4U1V|1|CA|G|1270
4U1V|1|CA|A|1271

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CM

30S ribosomal protein S13

Chain CN

30S ribosomal protein S14

Chain CS

30S ribosomal protein S19