HL_4U24_221

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGUAACACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U24_221 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.2288

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4U24|1|DA|G|711
4U24|1|DA|G|712
4U24|1|DA|G|713
4U24|1|DA|U|714
4U24|1|DA|A|715
4U24|1|DA|A|716
4U24|1|DA|C|717
4U24|1|DA|A|718
4U24|1|DA|C|719
4U24|1|DA|U|720

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CO

30S ribosomal protein S15

Chain DC

50S ribosomal protein L2