HL_4U25_081

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4U25|1|BA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_081 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0659

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4U25|1|BA|G|1949
4U25|1|BA|G|1950
4U25|1|BA|U|1951
4U25|1|BA|A|1952
4U25|1|BA|A|1953
4U25|1|BA|G|1954
4U25|1|BA|U|1955
4U25|1|BA|U|1956
4U25|1|BA|C|1957

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BK

50S ribosomal protein L14