HL_4U25_089

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_089 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0991

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4U25|1|BA|U|2324
4U25|1|BA|G|2325
4U25|1|BA|C|2326
4U25|1|BA|A|2327
4U25|1|BA|A|2328
4U25|1|BA|U|2329
4U25|1|BA|G|2330
4U25|1|BA|G|2331

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27