HL_4U25_092

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4U25|1|BA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_092 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0853

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4U25|1|BA|U|2404
4U25|1|BA|G|2405
4U25|1|BA|A|2406
4U25|1|BA|A|2407
4U25|1|BA|U|2408
4U25|1|BA|G|2409
4U25|1|BA|G|2410
4U25|1|BA|A|2411
4U25|1|BA|A|2412
4U25|1|BA|G|2413

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S ribosomal protein L15