HL_4U25_112

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_112 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1075

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U25|1|CA|A|320
4U25|1|CA|A|321
4U25|1|CA|C|322
4U25|1|CA|U|323
4U25|1|CA|G|324
4U25|1|CA|A|325
4U25|1|CA|G|326
4U25|1|CA|A|327
4U25|1|CA|C|328
4U25|1|CA|A|329
4U25|1|CA|C|330
4U25|1|CA|G|331
4U25|1|CA|G|332
4U25|1|CA|U|333

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20