HL_4U25_113

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4U25|1|CA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_113 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1785

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4U25|1|CA|C|342
4U25|1|CA|U|343
4U25|1|CA|A|344
4U25|1|CA|C|345
4U25|1|CA|G|346
4U25|1|CA|G|347

Current chains

Chain CA

16S rRNA

Nearby chains

Chain DK

50S ribosomal protein L14

Chain DP

50S ribosomal protein L19