HL_4U25_125

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4U25|1|CA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_125 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.139

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4U25|1|CA|G|963
4U25|1|CA|A|964
4U25|1|CA|U|965
4U25|1|CA|G|966
4U25|1|CA|C|967
4U25|1|CA|A|968
4U25|1|CA|A|969
4U25|1|CA|C|970
4U25|1|CA|G|971
4U25|1|CA|C|972

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CM

30S ribosomal protein S13