HL_4U25_142

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_142 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.1368

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

4U25|1|DA|C|225
4U25|1|DA|A|226
4U25|1|DA|A|227
4U25|1|DA|C|228
4U25|1|DA|C|229
4U25|1|DA|G|230

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15