HL_4U25_189

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4U25|1|DA|A|2268, 4U25|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_189 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0898

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4U25|1|DA|C|2264
4U25|1|DA|U|2265
4U25|1|DA|A|2266
4U25|1|DA|A|2267
4U25|1|DA|A|2268
4U25|1|DA|G|2269
4U25|1|DA|A|2270
4U25|1|DA|G|2271
4U25|1|DA|U|2272
4U25|1|DA|A|2273
4U25|1|DA|A|2274
4U25|1|DA|C|2275
4U25|1|DA|G|2276

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27