HL_4U25_201
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 4U25|1|DA|G|2751, 4U25|1|DA|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U25_201 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0891
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
4U25|1|DA|C|2745
4U25|1|DA|U|2746
4U25|1|DA|G|2747
4U25|1|DA|A|2748
4U25|1|DA|A|2749
4U25|1|DA|A|2750
4U25|1|DA|G|2751
4U25|1|DA|C|2752
4U25|1|DA|A|2753
4U25|1|DA|U|2754
4U25|1|DA|C|2755
4U25|1|DA|U|2756
4U25|1|DA|A|2757
4U25|1|DA|A|2758
4U25|1|DA|G|2759
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D4
- 50S ribosomal protein L36
- Chain DG
- 50S ribosomal protein L6
- Chain DJ
- 50S ribosomal protein L13
Coloring options: