HL_4U25_222
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 4U25|1|CA|A|1362, 4U25|1|CA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U25_222 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.286
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4U25|1|CA|G|1356
4U25|1|CA|A|1357
4U25|1|CA|U|1358
4U25|1|CA|C|1359
4U25|1|CA|A|1360
4U25|1|CA|G|1361
4U25|1|CA|A|1362
4U25|1|CA|A|1363
4U25|1|CA|U|1364
4U25|1|CA|G|1365
4U25|1|CA|C|1366
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CC
- 30S ribosomal protein S3
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
- Chain CN
- 30S ribosomal protein S14
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