HL_4U25_226

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U25_226 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.2103

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4U25|1|BA|G|2304
4U25|1|BA|U|2305
4U25|1|BA|C|2306
4U25|1|BA|G|2307
4U25|1|BA|G|2308
4U25|1|BA|A|2309
4U25|1|BA|C|2310
4U25|1|BA|A|2311
4U25|1|BA|U|2312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L5