HL_4U26_170

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4U26|1|DA|A|1453, 4U26|1|DA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U26_170 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.3254

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U26|1|DA|C|1451
4U26|1|DA|G|1452
4U26|1|DA|A|1453
4U26|1|DA|C|1454
4U26|1|DA|G|1455
4U26|1|DA|G|1456
4U26|1|DA|U|1457
4U26|1|DA|U|1458
4U26|1|DA|G|1459

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DN

50S ribosomal protein L17