HL_4U26_188

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4U26|1|DA|A|2268, 4U26|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U26_188 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0793

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4U26|1|DA|C|2264
4U26|1|DA|U|2265
4U26|1|DA|A|2266
4U26|1|DA|A|2267
4U26|1|DA|A|2268
4U26|1|DA|G|2269
4U26|1|DA|A|2270
4U26|1|DA|G|2271
4U26|1|DA|U|2272
4U26|1|DA|A|2273
4U26|1|DA|A|2274
4U26|1|DA|C|2275
4U26|1|DA|G|2276

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DM

50S ribosomal protein L16

Chain DW

50S ribosomal protein L27