3D structure

PDB id
4U27 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U27_029 not in the Motif Atlas
Homologous match to HL_5J7L_028
Geometric discrepancy: 0.1354
The information below is about HL_5J7L_028
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4U27|1|AA|C|1314
4U27|1|AA|U|1315
4U27|1|AA|G|1316
4U27|1|AA|C|1317
4U27|1|AA|A|1318
4U27|1|AA|A|1319
4U27|1|AA|C|1320
4U27|1|AA|U|1321
4U27|1|AA|C|1322
4U27|1|AA|G|1323

Current chains

Chain AA
16S rRNA

Nearby chains

Chain AM
30S ribosomal protein S13
Chain AN
30S ribosomal protein S14
Chain AS
30S ribosomal protein S19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4121 s